Last edited by Niktilar
Tuesday, July 21, 2020 | History

5 edition of X-PLOR Version 3.1 found in the catalog.

X-PLOR Version 3.1

A System for X-ray Crystallography and NMR

by Axel T. Brunger

  • 135 Want to read
  • 13 Currently reading

Published by Yale University Press .
Written in English

    Subjects:
  • Computer Software Packages,
  • Crystallography,
  • Chemistry - Analytic,
  • Chemistry - Organic,
  • Miscellaneous Software,
  • Science / General,
  • Molecular Biology,
  • X-Ray Crystallography,
  • Computers - Other Applications,
  • Computer programs,
  • Nuclear magnetic resonance spe,
  • Nuclear magnetic resonance spectroscopy,
  • Computer Books And Software

  • The Physical Object
    FormatPaperback
    Number of Pages405
    ID Numbers
    Open LibraryOL10318129M
    ISBN 100300054025
    ISBN 109780300054026

      The resulting crystallographic R values were for orthorhombic and for hexagonal data. Subsequent molecular dynamics procedures (at K for steps) followed by annealing using X-PLOR [30] of the two crystal forms models brought the R values down to and for the orthorhombic and hexagonal crystal forms, respectively. Brünger, X-PLOR, Version A System for X-ray Crystallography and NMR, The Howard Hughes Medical Institute and Department of Molecular Biophysics and .

    X-PLOR Version A System for X-Ray Crystallography and NMR / Axel T. Brunger / Moral Economy of Labor: Aristotelian Themes in Economic Theory / James Bernard Murphy / Women and Politics Worldwide / Barbara J. Nelson / X-PLOR Version A System for X-ray Crystallography and NMR. Book X-PLOR Version A System for X-ray Crystallography and NMR. To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.

    Brünger, A.T. X-PLOR (Version ) Manual (The Howard Hughes Medical Institute and Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, ). Google Scholar. The X-ray structure of a sucrose-specific porin (ScrY) from Salmonella typhimurium has been determined by multiple isomorphous replacement at Å resolution both in its uncomplexed form and.


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X-PLOR Version 3.1 by Axel T. Brunger Download PDF EPUB FB2

This manual to X-PLOR Version presents the theoretical background, syntax, and function of the program and also provides a comprehensive list of references and sample input files with comments. It is intended primarily for researchers and students in the fields of computational chemistry, structural biology, and computational molecular biology.

This manual to X-PLOR Version presents the theoretical background, syntax, and function of the program and also provides a comprehensive list of references and sample input files with comments.

It is intended primarily for researchers and students in the fields of computational chemistry, structural biology, and computational molecular biology. This manual to X-PLOR Version presents the theoretical background, syntax, and function of the program and also provides a comprehensive list of references and sample input files with comments.

It is intended primarily for researchers and students in the fields of computational chemistry, structural biology, and computational molecular by: Get this from a library. X-PLOR, Version a system for X-ray crystallography and NMR. [Axel T Brünger]. X-PLOR is a sophisticated computer programme that provides an interface betweeen theoretical foundations and experimental results in structural biology, with specific emphasis on X-ray crystallography and nuclear magnetic resonance of large biological molecules.

This manual to X-PLOR Version presents the theoretical background, syntax and. X-PLOR software, copyright by the President and Fellows of Harvard University; copyright,by Yale University.

Back to the Main Page Contents. A stunning book as riveting as a sunbeam to a young child."—Thomas E. Lovejoy, University Professor of Environmental Science and Policy, George Mason University "Put aside that can of Raid for the short time it takes to read this book."—.

Section of the X-PLOR manual describes the crystallographic data file format. An important difference between the current version of X-PLOR and X-PLOR is that the data item for the observed structure factor, FOBS, is now a complex array that contains both amplitude and phase components and the PHASe keyword is no longer used to.

X-PLOR, Version A System for X-ray Crystallography and NMR, Yale Univ. Press, New Haven (). Circuit of miles (5 km) of jungle and caves driving an amphibious vehicle. Swim in the yard ( m) stalactite river inside ancient caves. Underground river rafts of yards ( m) paddling with special hand paddles.

Hammock Splash. Spelunking hike. BBQ buffet with. Structure calculations were performed using the YASAP protocol within X-PLOR version [29,30] installed on a regular Linux workstation (CentOS 6), as described previously.

Fifty independent structures were calculated, and the 10 lowest-energy structures were selected. Book X-PLOR Version A System for X-ray Crystallography and NMR. Yale University Press, New Haven, CT. Non-Canonical Gquadruplexes cause the hCEB1 minisatellite instability in.

Brünger. X-PLOR, VersionA system for Crystallography and University Press, New Haven, Google Scholar. We have determined the crystal structure at Å resolution of an amino-terminal segment of human insulin receptor substrate 1 that encompasses its pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains.

Both domains adopt the canonical seven-stranded β-sandwich PH domain fold. The domains are closely associated, with a Å2 contact surface buried between them that appears to. Scientific scope. Section D of Acta Crystallographica welcomes the submission of articles covering any aspect of structural biology, with a particular emphasis on the structures of biological macromolecules and the methods used to determine them.

Reports on new protein structures are particularly encouraged, as are structure–function articles that could include crystallographic binding. Combining X-ray crystallographically determined atomic structures of component domains or subunits with cryo-electron microscopic three-dimensional images at around 22 Å resolution can produce structural information that is accurate to about Å resolution.

In an initial step, it is necessary to determine accurately the absolute scale and absolute hand of the cryo-electron microscopy map.

Brunger, A. X-PLOR, Version ; The Howard Hugher Medical Institute and Department of Molecular Biophysics and Biochemistry, Yale University: New Haven, CT, Jan DNA base flipping, or nucleotide flipping, is a mechanism in which a single nucleotide base, or nucleobase, is rotated outside the nucleic acid double helix.

This occurs when a nucleic acid-processing enzyme needs access to the base to perform work on it, such as its excision for replacement with another base during DNA was first observed in using X-ray crystallography in a.

Abstract. This chapter gives an introduction to automated nuclear magnetic resonance (NMR) structure calculation with the program CYANA. Given a sufficiently complete list of assigned chemical shifts and one or several lists of cross-peak positions and columes from two- three- or four-dimensional nuclear Overhauser effect spectroscopy (NOESY) spectra, the assignment of the NOESY cross-peaks.

Simulated annealing calculations with the X-PLOR program have previously used the Berendsen thermal coupling method to control the temperature of the system (see pages of the X-PLOR manual). Temperature control with the Berendsen method is obtained by adding a force to each atom that is proportional to the individual atomic velocity.

Shop wholesale health, medicine & parenting books. No hurts, returns, damaged or shelf-worn copies.X-PLOR Version A System for X-ray Crystallography and NMR. Book X-PLOR Version A System for X-ray Crystallography and NMR. New Haven, CT: Yale University Press; Wijmenga SS, Van Buuren BNM.

The use of NMR methods for conformational studies of nucleic acids.Molecular replacement in X-PLOR / CNS. X-PLOR (Brünger, b), which successively evolved into CNS (Crystallography & NMR System; Brünger et al., ), is a software package for computational structural biology developed by Axel Brunger at Yale University, with specific emphasis on X-ray crystallography and nuclear magnetic resonance of biological macromolecules.